Basic Information
Locus ID:
gene-LOC103722642
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 572330 | 578135 | - | gene-LOC103722642 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 28,802.16 Da | 46.79 | 66.90 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 146 | 194 | 1.76836E-13 | - |
| Pfam | PF12906 | RING-variant domain | 146 | 193 | 4.2E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 143 | 197 | 9.71E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 204 | 6.0E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 145 | 194 | 4.5E-21 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 138 | 200 | 20.56249 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_008811493.2 | uncharacterized protein LOC103722642 isoform X1 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8B7D1V2 | uncharacterized protein LOC103722642 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103722642 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology