Basic Information
Locus ID:
gene-LOC103722332
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 14699292 | 14847824 | + | gene-LOC103722332 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 478,461.53 Da | 44.74 | 89.56 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2650 | 2755 | 7.95438E-6 | - |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 7.6E-32 | IPR026854 |
| Pfam | PF06398 | Integral peroxisomal membrane peroxin | 2869 | 3023 | 6.9E-10 | IPR010482 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2006 | 2160 | 1.4E-11 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 576 | 803 | 3.1E-32 | IPR031642 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3398 | 3589 | 8.9E-13 | IPR009543 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2315 | 2398 | 1.1E-8 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 140 | 382 | 5.6E-67 | IPR031646 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2634 | 2756 | 2.18E-5 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2634 | 2778 | 9.9E-7 | IPR035892 |
| SMART | SM00694 | dysfc | 2988 | 3028 | 0.0012 | IPR006614 |
| Coils | Coil | Coil | 626 | 653 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_038986982.1 | uncharacterized protein LOC103722332 isoform X1 [Phoenix dactylifera] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9AMX4 | uncharacterized protein LOC103722332 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103722332 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology