Basic Information
Locus ID:
gene-LOC103721864
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 14501220 | 14504321 | - | gene-LOC103721864 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 28,893.71 Da | 68.00 | 76.38 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 37 | 82 | 1.83824E-25 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 39 | 80 | 3.3E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 33 | 93 | 4.57E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 95 | 3.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 39 | 80 | 1.8E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 39 | 81 | 13.521988 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 54 | 63 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_008810454.1 | E3 ubiquitin-protein ligase RMA3-like [Phoenix dactylifera] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8JCC2 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103721864 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology