Basic Information
Locus ID:
gene-LOC103720599
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 27050324 | 27086996 | - | gene-LOC103720599 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 135,739.19 Da | 45.04 | 78.83 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 53 | 176 | 5.2534E-40 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 194 | 559 | 2.36678E-162 | - |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 658 | 910 | 5.7E-76 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 920 | 1131 | 2.2E-58 | IPR029346 |
| Pfam | PF00917 | MATH domain | 58 | 178 | 4.0E-19 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 196 | 494 | 6.2E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 191 | 586 | 8.44E-94 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 50 | 185 | 1.36E-41 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 718 | 835 | 1.6E-43 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 50 | 192 | 1.4E-54 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 193 | 558 | 7.7E-87 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 836 | 933 | 3.2E-27 | - |
| SMART | SM00061 | math_3 | 53 | 157 | 1.0E-20 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 196 | 500 | 39.388 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 51 | 176 | 38.289589 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 197 | 212 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 436 | 453 | - | IPR018200 |
| Coils | Coil | Coil | 570 | 600 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_008808598.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X1 [Phoenix dactylifera] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B7CXG2 | ubiquitinyl hydrolase 1 OS=Phoenix dactylifera OX=42345 GN=LOC103720599 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology