Basic Information
Locus ID:
gene-LOC103720598
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Rhomboid family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 27204365 | 27231949 | - | gene-LOC103720598 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 44,577.11 Da | 49.66 | 106.60 | 0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14287 | UBA_At3g58460_like | 370 | 405 | 5.13906E-12 | - |
| Pfam | PF01694 | Rhomboid family | 60 | 213 | 2.8E-25 | IPR022764 |
| Pfam | PF00627 | UBA/TS-N domain | 370 | 404 | 1.3E-6 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 362 | 407 | 7.3E-10 | IPR009060 |
| SUPERFAMILY | SSF144091 | Rhomboid-like | 20 | 215 | 6.67E-32 | IPR035952 |
| Gene3D | G3DSA:1.20.1540.10 | - | 17 | 213 | 1.5E-30 | IPR035952 |
| Gene3D | G3DSA:1.10.8.10 | - | 341 | 409 | 7.6E-19 | - |
| SMART | SM00165 | uba_6 | 369 | 406 | 8.1E-6 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 368 | 407 | 12.595088 | IPR015940 |
| Coils | Coil | Coil | 359 | 379 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58460.1 | RHOMBOID-like protein 15. | 0 |
| RefSeq | XP_008808594.2 | rhomboid-like protein 15 isoform X1 [Phoenix dactylifera] | 0 |
| Q8LB17 | Rhomboid-like protein 15 OS=Arabidopsis thaliana OX=3702 GN=RBL15 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B7CXC0 | rhomboid-like protein 15 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103720598 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg31863, jg32760 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2339 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002981 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g109390 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15891, Sbi_jg56669 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13857 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027414 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52722, Sgl58008 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006363, gene:ENSEOMG00000021161 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0011850, CQ.Regalona.r1.5BG0012360 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30277350 |
| Apiaceae | Apium graveolens | 1 | Ag3G00707 |
| Arecaceae | Cocos nucifera | 1 | scaffold002727G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720598 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.443.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G14233 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G58460.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006012m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g04420.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g073020.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1223 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1383 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g14020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g39920 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7757 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1807 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1295, BH01.1344, CH01.1389 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0223600, gene-QOZ80_3BG0268370 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0507520.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063305 |
| Poaceae | Oryza coarctata | 1 | Oco06G020090 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g44830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G140400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104571 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G025150, Chr07G023990, Chr12G028090 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G590900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG054170, gene_TRIDC5BG058140 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G370500.1, TraesCS5B02G372800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb052940_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20526 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3157 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.469, evm.TU.LG26.567 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g00610 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1290 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6307 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18128 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4148 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.370 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017004 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7541 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13473 |
| Salicaceae | Populus euphratica | 1 | populus_peu12360 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607258 |
| Solanaceae | Solanum chilense | 1 | SOLCI000939000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032054 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16084 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0674 |
| Zosteraceae | Zostera marina | 1 | Zosma05g33065.v3.1 |