Basic Information
Locus ID:
gene-LOC103719560
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
AMSH-like ubiquitin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 14090608 | 14106188 | - | gene-LOC103719560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 57,670.77 Da | 47.82 | 88.34 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 337 | 512 | 1.72212E-113 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 336 | 441 | 1.4E-16 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 10 | 106 | 4.0E-12 | IPR015063 |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 22 | 115 | 1.19E-5 | - |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 337 | 468 | 6.28E-21 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 324 | 512 | 1.2E-70 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 6 | 126 | 3.9E-32 | - |
| SMART | SM00232 | pad1_6 | 337 | 465 | 2.4E-20 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 338 | 468 | 32.016579 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 211 | - | - |
| Coils | Coil | Coil | 84 | 111 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_008807080.1 | AMSH-like ubiquitin thioesterase 1 [Phoenix dactylifera] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7CV58 | AMSH-like ubiquitin thioesterase 1 OS=Phoenix dactylifera OX=42345 GN=LOC103719560 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology