Basic Information
Locus ID:
gene-LOC103719384
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000331F | 417819 | 442602 | + | gene-LOC103719384 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 56,083.75 Da | 63.07 | 80.26 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 246 | 294 | 2.65243E-16 | - |
| Pfam | PF12906 | RING-variant domain | 246 | 293 | 1.5E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 242 | 297 | 2.68E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 230 | 302 | 1.4E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 245 | 294 | 7.3E-20 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 238 | 300 | 19.279036 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 508 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_038974204.1 | uncharacterized protein LOC103719384 isoform X1 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8B8ZRY0 | uncharacterized protein LOC103719384 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103719384 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology