Basic Information
Locus ID:
gene-LOC103719070
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 3590025 | 3597540 | - | gene-LOC103719070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 111,841.46 Da | 47.90 | 106.87 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 269 | 310 | 4.18048E-20 | - |
| Pfam | PF04564 | U-box domain | 269 | 335 | 1.3E-16 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 339 | 999 | 2.28E-39 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 256 | 338 | 4.37E-25 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 339 | 532 | 1.7E-21 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 244 | 338 | 6.6E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 872 | 1007 | 1.6E-11 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 533 | 858 | 1.5E-39 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 15 | 132 | 5.3E-5 | IPR036537 |
| SMART | SM00185 | arm_5 | 535 | 575 | 6.6 | IPR000225 |
| SMART | SM00185 | arm_5 | 803 | 843 | 29.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 369 | 409 | 4.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 877 | 917 | 21.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 756 | 800 | 34.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 921 | 961 | 80.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 268 | 331 | 3.6E-24 | IPR003613 |
| SMART | SM00185 | arm_5 | 411 | 451 | 97.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 576 | 619 | 5.6 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 264 | 338 | 30.192141 | IPR003613 |
| Coils | Coil | Coil | 199 | 226 | - | - |
| Coils | Coil | Coil | 477 | 497 | - | - |
| Coils | Coil | Coil | 352 | 379 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20780.1 | senescence-associated E3 ubiquitin ligase 1. Encodes a protein containing a U-box and an ARM domain. | 0 |
| RefSeq | XP_008806361.1 | U-box domain-containing protein 44-like isoform X1 [Phoenix dactylifera] | 0 |
| Q9LM76 | U-box domain-containing protein 44 OS=Arabidopsis thaliana OX=3702 GN=PUB44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CUH6 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103719070 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10276, jg29483 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30006200, pistato.v30165330 |
| Apiaceae | Apium graveolens | 1 | Ag11G03591 |
| Arecaceae | Cocos nucifera | 1 | scaffold021460G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719070 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.421.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G26855, Ftri5G33561 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1296 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1451 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2849 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.629 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21588 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9626 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7428 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.191 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017527 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1687 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5412 |
| Salicaceae | Populus euphratica | 6 | populus_peu27526, populus_peu27527, populus_peu27984 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132632125, gene-LOC132644366, gene-LOC132645405 |
| Solanaceae | Solanum chilense | 2 | SOLCI000591400, SOLCI005051300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008446 |