Basic Information
Locus ID:
gene-LOC103719050
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000207F | 270149 | 303059 | + | gene-LOC103719050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 89,884.77 Da | 42.45 | 94.31 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 409 | 709 | 4.44647E-154 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 93 | 391 | 1.50822E-175 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 101 | 387 | 5.8E-6 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 414 | 704 | 2.8E-35 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 408 | 709 | 1.28E-45 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 93 | 391 | 1.12E-46 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 407 | 710 | 3.1E-46 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 92 | 393 | 4.0E-37 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 93 | 393 | 34.792255 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 409 | 710 | 33.192596 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 767 | 787 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_017701195.2 | glycerophosphodiester phosphodiesterase GDPDL3 isoform X1 [Phoenix dactylifera] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7MX34 | glycerophosphodiester phosphodiesterase OS=Phoenix dactylifera OX=42345 GN=LOC103719050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology