Basic Information
Locus ID:
gene-LOC103718821
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
High mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 7516676 | 7529248 | + | gene-LOC103718821 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.47 | 40,478.57 Da | 47.67 | 61.48 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 40 | 125 | 1.54096E-41 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 260 | 324 | 1.77372E-19 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 264 | 326 | 3.2E-13 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 42 | 125 | 4.1E-17 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 252 | 329 | 1.05E-18 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 32 | 138 | 1.29E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 243 | 349 | 2.8E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 28 | 137 | 3.9E-25 | IPR036431 |
| SMART | SM00501 | bright_3 | 39 | 130 | 2.1E-28 | IPR001606 |
| SMART | SM00398 | hmgende2 | 259 | 328 | 5.0E-16 | IPR009071 |
| SMART | SM01014 | ARID_2 | 35 | 125 | 1.2E-26 | - |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 260 | 327 | 15.633509 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 38 | 129 | 24.554293 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 183 | - | - |
| Coils | Coil | Coil | 316 | 336 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_038984768.1 | high mobility group B protein 9-like [Phoenix dactylifera] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9AL58 | high mobility group B protein 9-like OS=Phoenix dactylifera OX=42345 GN=LOC103718821 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology