Basic Information
Locus ID:
gene-LOC103718312
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 21044310 | 21054648 | + | gene-LOC103718312 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 114,609.23 Da | 50.02 | 98.78 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 257 | 304 | 2.5926E-18 | - |
| Pfam | PF04564 | U-box domain | 256 | 328 | 1.6E-15 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 246 | 328 | 9.89E-21 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 679 | 1024 | 2.37E-18 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 347 | 673 | 4.32E-27 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 240 | 336 | 1.6E-22 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 344 | 852 | 5.6E-40 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 891 | 1033 | 5.9E-10 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 256 | 324 | 9.6E-23 | IPR003613 |
| SMART | SM00185 | arm_5 | 535 | 573 | 210.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 986 | 1026 | 390.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 574 | 618 | 8.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 811 | 853 | 150.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 365 | 409 | 270.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 897 | 938 | 5.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 410 | 450 | 130.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 252 | 331 | 19.347313 | IPR003613 |
| Coils | Coil | Coil | 484 | 504 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76390.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_008805290.1 | U-box domain-containing protein 43-like [Phoenix dactylifera] | 0 |
| Q9SFX2 | U-box domain-containing protein 43 OS=Arabidopsis thaliana OX=3702 GN=PUB43 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7CS95 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103718312 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6897 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027823 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g171960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1554, Sbi_jg34993 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg3191, Seu_jg3192 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003380 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72805, Sgl76344 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000035718, gene:ENSEOMG00000037562 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0004470, CQ.Regalona.r1.9BG0001160 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30061300, pistato.v30065060 |
| Apiaceae | Apium graveolens | 1 | Ag2G00822 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G003250, scaffold075410G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718312 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.264.V1.1, AsparagusV1_Unassigned.156.V1.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1866 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1922 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1080 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37730, Lb3G18363, Lb3G19221 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1057, evm.TU.LG24.1060 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g36720 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3639 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1216 |