Basic Information
Locus ID:
gene-LOC103718136
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase UPL4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 6060451 | 6072021 | - | gene-LOC103718136 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 172,731.42 Da | 47.88 | 92.46 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1151 | 1545 | 4.01439E-108 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1240 | 1547 | 2.0E-78 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1140 | 1540 | 1.57E-91 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 99 | 536 | 2.42E-33 | IPR016024 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1429 | 1545 | 4.3E-32 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 96 | 542 | 4.1E-45 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1091 | 1323 | 5.6E-37 | - |
| SMART | SM00119 | hect_3 | 1163 | 1547 | 5.7E-90 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1165 | 1547 | 60.42754 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 77 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_008805036.2 | E3 ubiquitin-protein ligase UPL4-like [Phoenix dactylifera] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8B9APP3 | HECT-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103718136 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology