Basic Information
Locus ID:
gene-LOC103717971
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000139F | 360133 | 365903 | + | gene-LOC103717971 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 24,424.13 Da | 58.91 | 85.91 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 156 | 190 | 2.6E-4 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 187 | 3.77E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 123 | 217 | 8.6E-9 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 156 | 198 | 9.509172 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 172 | 181 | - | IPR017907 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01020.1 | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_038972718.1 | ATP-dependent RNA helicase DEAH11, chloroplastic-like [Phoenix dactylifera] | 0 |
| P0CE10 | ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01020 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8B8ZMM0 | ATP-dependent RNA helicase DEAH11, chloroplastic-like OS=Phoenix dactylifera OX=42345 GN=LOC103717971 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000003636, gene:ENSEOMG00000025916 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717971 |
| Brassicaceae | Brassica nigra | 1 | BniB01g033480.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g07910 |