Basic Information
Locus ID:
gene-LOC103717452
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 4928044 | 4928562 | + | gene-LOC103717452 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 20,120.90 Da | 34.01 | 90.17 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 118 | 160 | 6.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 118 | 166 | 3.31E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 105 | 171 | 9.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 119 | 159 | 1.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 119 | 160 | 12.917115 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01960.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_008804068.2 | E3 ubiquitin-protein ligase RNF43-like [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8B7CQA3 | E3 ubiquitin-protein ligase RNF43-like OS=Phoenix dactylifera OX=42345 GN=LOC103717452 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 5 | gene_16691, gene_18522, gene_19539, gene_19766, gene_9814 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg52837 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9037 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717452 |
| Solanaceae | Solanum chilense | 1 | SOLCI004904300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007023 |