Basic Information
Locus ID:
gene-LOC103716787
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 24576216 | 24577515 | - | gene-LOC103716787 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 24,594.85 Da | 64.63 | 75.47 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 165 | 207 | 4.05158E-15 | - |
| Pfam | PF13639 | Ring finger domain | 164 | 207 | 2.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 158 | 213 | 4.57E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 211 | 3.7E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 165 | 206 | 2.8E-6 | IPR001841 |
| SMART | SM00744 | ringv_2 | 164 | 207 | 4.7E-4 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 207 | 12.99088 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04240.1 | RING/U-box superfamily protein. Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism. | 0 |
| RefSeq | XP_008803170.2 | probable E3 ubiquitin-protein ligase XERICO [Phoenix dactylifera] | 0 |
| Q9SI09 | Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CP49 | probable E3 ubiquitin-protein ligase XERICO OS=Phoenix dactylifera OX=42345 GN=LOC103716787 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology