Basic Information
Locus ID:
gene-LOC103716776
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
A domain family that is part of the cupin metalloenzyme superfamily.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 13673312 | 13682167 | - | gene-LOC103716776 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 162,090.56 Da | 47.52 | 63.83 | -0.87 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02208 | cupin_RmlC-like | 1259 | 1340 | 0.00170775 | - |
| Pfam | PF08879 | WRC | 13 | 49 | 1.2E-11 | IPR014977 |
| Pfam | PF02373 | JmjC domain, hydroxylase | 1242 | 1339 | 4.5E-15 | IPR003347 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 522 | 699 | 8.79E-9 | - |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 1240 | 1387 | 8.1E-24 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1176 | 1365 | 1.1E-70 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 507 | 753 | 5.8E-97 | - |
| SMART | SM00558 | cupin_9 | 625 | 1356 | 3.5E-79 | IPR003347 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 198 | 244 | 8.683004 | IPR001841 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 10 | 54 | 18.396606 | IPR014977 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 644 | 1356 | 20.098652 | IPR003347 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1126 | 1146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1193 | 1207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 862 | 876 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 725 | 754 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1398 | 1418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1068 | 1086 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1047 | 1067 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1421 | 1448 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 844 | 861 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1047 | 1243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 379 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 842 | 877 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1393 | 1448 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62310.1 | transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_008803158.1 | lysine-specific demethylase JMJ25-like [Phoenix dactylifera] | 0 |
| C0SV12 | Lysine-specific demethylase JMJ29 OS=Arabidopsis thaliana OX=3702 GN=JMJ29 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7CNS1 | lysine-specific demethylase JMJ25-like OS=Phoenix dactylifera OX=42345 GN=LOC103716776 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology