Basic Information
Locus ID:
gene-LOC103716743
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 12150829 | 12152683 | - | gene-LOC103716743 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 42,681.13 Da | 75.34 | 58.04 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 186 | 227 | 5.64689E-23 | - |
| Pfam | PF14369 | zinc-ribbon | 6 | 36 | 2.0E-14 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 185 | 227 | 2.6E-11 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 258 | 368 | 8.2E-41 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 166 | 233 | 9.94E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 234 | 4.5E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 186 | 226 | 3.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 186 | 227 | 12.25323 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 253 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_008803097.2 | E3 ubiquitin-protein ligase RDUF1-like isoform X1 [Phoenix dactylifera] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CNQ5 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103716743 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology