Basic Information
Locus ID:
gene-LOC103716708
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
E3 ubiquitin-protein ligase XBOS33
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 9425600 | 9437774 | + | gene-LOC103716708 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.06 | 47,389.94 Da | 47.12 | 90.30 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 177 | 204 | 4.3E-5 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 220 | 245 | 1.0E-4 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 49 | 145 | 2.8E-18 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 15 | 273 | 6.96E-49 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 334 | 395 | 9.96E-7 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 7 | 153 | 4.7E-32 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 324 | 406 | 3.5E-5 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 156 | 284 | 1.6E-22 | IPR036770 |
| SMART | SM00248 | ANK_2a | 111 | 143 | 2.6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 176 | 205 | 4.7E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.005 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 4.8E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 219 | 248 | 0.0017 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 77 | 98 | 8.560909 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 8.73634 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 8.720098 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 12.301834 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 176 | 204 | 11.001797 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 219 | 251 | 11.62102 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 339 | 389 | 9.612443 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 98 | 8.57608 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 219 | 250 | 10.524231 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 13.19691 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 176 | 208 | 11.327209 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 354 | 363 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_017700584.2 | probable E3 ubiquitin-protein ligase XBOS33 isoform X1 [Phoenix dactylifera] | 0 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7MVS3 | probable E3 ubiquitin-protein ligase XBOS33 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103716708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology