Basic Information
Locus ID:
gene-LOC103716585
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
E3 ubiquitin protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 12546410 | 12554597 | + | gene-LOC103716585 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 32,433.18 Da | 62.28 | 78.38 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 24 | 64 | 8.4E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 18 | 90 | 2.05E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 10 | 108 | 1.5E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 24 | 64 | 2.8E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 24 | 65 | 11.604098 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 40 | 49 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 195 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30580.1 | DREB2A-interacting protein 2. Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance. | 0 |
| RefSeq | XP_038985502.1 | E3 ubiquitin protein ligase DRIP2-like [Phoenix dactylifera] | 0 |
| Q94AY3 | E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9AI88 | E3 ubiquitin protein ligase DRIP2-like OS=Phoenix dactylifera OX=42345 GN=LOC103716585 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103716584, gene-LOC103716585 |