Basic Information
Locus ID:
gene-LOC103716511
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 22653397 | 22657881 | - | gene-LOC103716511 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 72,783.88 Da | 39.63 | 98.37 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 261 | 303 | 1.27648E-27 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 382 | 421 | 1.5E-10 | IPR000225 |
| Pfam | PF04564 | U-box domain | 257 | 327 | 1.3E-19 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 465 | 503 | 1.5E-7 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 352 | 638 | 1.58E-50 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 254 | 333 | 1.74E-29 | - |
| Gene3D | G3DSA:1.20.930.20 | - | 9 | 125 | 9.7E-12 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 257 | 330 | 6.3E-30 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 342 | 447 | 4.2E-22 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 448 | 643 | 6.1E-31 | IPR011989 |
| SMART | SM00185 | arm_5 | 546 | 586 | 29.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 505 | 545 | 36.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 464 | 504 | 0.018 | IPR000225 |
| SMART | SM00185 | arm_5 | 423 | 463 | 0.89 | IPR000225 |
| SMART | SM00185 | arm_5 | 382 | 422 | 5.7E-8 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 260 | 323 | 8.3E-33 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 256 | 330 | 43.593376 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 475 | 517 | 8.8724 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 393 | 435 | 13.3174 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_008802759.2 | protein spotted leaf 11-like [Phoenix dactylifera] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B7CN51 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103716511 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology