Basic Information
Locus ID:
gene-LOC103716421
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Short Name:
FTSH6
Description:
Belongs to the AAA ATPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 7836746 | 7855376 | - | gene-LOC103716421 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 128,041.06 Da | 44.59 | 92.35 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 225 | 383 | 1.95221E-28 | - |
| Pfam | PF13041 | PPR repeat family | 935 | 982 | 5.3E-10 | IPR002885 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 250 | 382 | 3.7E-44 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 406 | 448 | 3.7E-11 | IPR041569 |
| Pfam | PF01535 | PPR repeat | 1083 | 1108 | 0.32 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1010 | 1035 | 0.044 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 737 | 766 | 0.0024 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 835 | 880 | 2.0E-8 | IPR002885 |
| Pfam | PF01434 | Peptidase family M41 | 463 | 653 | 2.7E-65 | IPR000642 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 209 | 453 | 1.39E-70 | IPR027417 |
| SUPERFAMILY | SSF140990 | FtsH protease domain-like | 465 | 657 | 4.58E-64 | IPR037219 |
| Gene3D | G3DSA:1.10.8.60 | - | 384 | 463 | 1.3E-22 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 736 | 894 | 2.1E-24 | IPR011990 |
| Gene3D | G3DSA:3.30.720.210 | - | 76 | 156 | 6.6E-6 | - |
| Gene3D | G3DSA:1.20.58.760 | Peptidase M41 | 464 | 664 | 1.5E-63 | IPR037219 |
| Gene3D | G3DSA:3.40.50.300 | - | 201 | 382 | 9.0E-71 | IPR027417 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 910 | 1122 | 1.4E-39 | IPR011990 |
| SMART | SM00382 | AAA_5 | 246 | 385 | 5.5E-25 | IPR003593 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 837 | 870 | 3.8E-5 | IPR002885 |
| TIGRFAM | TIGR01241 | FtsH_fam: ATP-dependent metallopeptidase HflB | 161 | 654 | 1.9E-208 | IPR005936 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 939 | 971 | 2.0E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 737 | 770 | 2.2E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 835 | 869 | 10.457138 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1076 | 1110 | 8.670445 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 734 | 768 | 9.843305 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 936 | 970 | 12.210946 | IPR002885 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 353 | 371 | - | IPR003960 |
| Hamap | MF_01458 | ATP-dependent zinc metalloprotease FtsH [ftsH]. | 24 | 661 | 34.981297 | IPR005936 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15250.1 | FTSH protease 6. Encodes an FtsH protease that is localized to the chloroplast. AtFtsH6 is involved in the degradation of both Lhcb3 and Lhcb1 during senescence and high-light acclimation. | 0 |
| RefSeq | XP_008802626.2 | ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like [Phoenix dactylifera] | 0 |
| Q1PDW5 | ATP-dependent zinc metalloprotease FTSH 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FTSH6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7CMY1 | ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like OS=Phoenix dactylifera OX=42345 GN=LOC103716421 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19289, jg19953 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11506, gene_21200 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah006893, Ah011706 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g208930 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11988, Sbi_jg46917 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21206 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008028, GOSA_00009546 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl25093, Sgl30263, Sgl30264, Sgl80395, Sgl82857 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000009318, gene:ENSEOMG00000018298 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0014600, CQ.Regalona.r1.4BG0013110 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30089070, pistato.v30194620 |
| Apiaceae | Apium graveolens | 3 | Ag4G02095, Ag7G01572, Ag8G00882 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G005770, COCNU_08G007580, scaffold004312G000050 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705127, gene-LOC103716421 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.29.V1.1, AsparagusV1_08.207.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G04105, Ftri11G09617, Ftri6G33508 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G06430.1, AT2G30950.1, AT5G15250.2 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10006971m.g.v1.0, Thhalv10016003m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g05190.v2.2, Sp4g13440.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g047630.2N, BniB03g001870.2N, BniB06g020050.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2895, Ceq08G0283 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G3017 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g13510 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1123s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g07490 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9363 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.195, evm.TU.LG04.1680 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008613, Pov_00020264 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G19529, Lb4G21847 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2622, AH06.908, BH06.2425, BH06.941, CH06.1035 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0514730, gene-QOZ80_6AG0547740 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0666580.1, HORVU.MOREX.r3.7HG0736940.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028901 |
| Poaceae | Oryza coarctata | 4 | Oco11G005860, Oco11G014930, Oco12G005930, Oco12G015100 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g12370.1, LOC_Os06g45820.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G096000, gene-BS78_10G223000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103211, Pt_Chr0401297 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G031610, Chr05G009470, Chr10G019980, Chr11G002680 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G347500, Tel7E01G797300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC7AG023390, gene_TRIDC7AG065720 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G188300.1, TraesCS7A02G471000.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb274190_P001, Zm00001eb279710_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-35128, nbis-gene-40527, nbis-gene-51395 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g29394, Zma_g30971, Zma_g31627, Zma_g33231 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1033, evm.TU.LG06.1411, evm.TU.LG11.229 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g28680 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.48567.1, evm.TU.Scaffold_6_RagTag.280 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11756, nbisL1-mrna-15135, nbisL1-mrna-21003 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-2168, nbisL1-mrna-727, nbisL1-mrna-8632 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11171, nbisL1-mrna-18672, nbisL1-mrna-236 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000006l.752, evm.TU.utg000011l.163 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013627 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11794, nbisL1-mrna-1333, nbisL1-mrna-9791 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-17335, nbisL1-mrna-19976, nbisL1-mrna-4899 |
| Salicaceae | Populus euphratica | 5 | populus_peu24528, populus_peu24538, populus_peu27152 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618745, gene-LOC132622252 |
| Solanaceae | Solanum chilense | 2 | SOLCI005316100, SOLCI005367300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009138, gene-LOC107025769 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.8244_chr05_+, gene_16959 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G1919, TC06G0682 |
| Zosteraceae | Zostera marina | 2 | Zosma03g30160.v3.1, Zosma04g25210.v3.1 |