Basic Information
Locus ID:
gene-LOC103716258
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 2030802 | 2051673 | - | gene-LOC103716258 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 88,370.48 Da | 42.34 | 67.61 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 522 | 807 | 1.99369E-61 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 691 | 724 | 9.4E-5 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 4.7E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 528 | 558 | 0.1 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 566 | 600 | 2.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 608 | 644 | 0.0015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 771 | 807 | 0.05 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 520 | 807 | 2.83E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 660 | 807 | 6.1E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 503 | 659 | 2.1E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 647 | 683 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 768 | 807 | 5.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 686 | 724 | 3.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 727 | 766 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 604 | 644 | 2.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 519 | 558 | 1.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 561 | 600 | 5.6E-6 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 6.9E-4 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 611 | 653 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 568 | 600 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 775 | 807 | 11.339228 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 775 | 807 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 693 | 733 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 568 | 600 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 526 | 567 | 9.238559 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.579922 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 611 | 646 | 8.834696 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 431 | - | - |
| Coils | Coil | Coil | 366 | 386 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_008802406.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Phoenix dactylifera] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CMK5 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103716258 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology