Basic Information
Locus ID:
gene-LOC103716161
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 8001388 | 8019210 | - | gene-LOC103716161 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 108,816.68 Da | 61.82 | 63.20 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 450 | 754 | 4.06529E-138 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 451 | 753 | 2.2E-45 | IPR001394 |
| Pfam | PF01753 | MYND finger | 22 | 59 | 8.8E-10 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 447 | 759 | 1.55E-85 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 19 | 60 | 3.31E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 443 | 767 | 4.9E-93 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 5 | 62 | 9.1E-14 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 22 | 59 | 11.792793 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 451 | 756 | 51.619114 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 452 | 467 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 22 | 59 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 881 | 908 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 831 | 860 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 830 | 861 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 330 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_008802270.2 | ubiquitin carboxyl-terminal hydrolase 18-like [Phoenix dactylifera] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CMD4 | ubiquitin carboxyl-terminal hydrolase 18-like OS=Phoenix dactylifera OX=42345 GN=LOC103716161 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology