Basic Information
Locus ID:
gene-LOC103715911
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Short Name:
NTMC2T2.1
Description:
C2 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 36380684 | 36398847 | - | gene-LOC103715911 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 64,497.30 Da | 30.41 | 101.22 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 443 | 539 | 6.54274E-26 | - |
| CDD | cd00030 | C2 | 264 | 366 | 2.64623E-27 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 248 | 1.4E-13 | IPR039010 |
| Pfam | PF00168 | C2 domain | 441 | 542 | 5.7E-24 | IPR000008 |
| Pfam | PF00168 | C2 domain | 262 | 366 | 6.1E-23 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 392 | 3.87E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 440 | 557 | 2.68E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 258 | 399 | 1.1E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 421 | 560 | 7.0E-34 | IPR035892 |
| SMART | SM00239 | C2_3c | 442 | 540 | 3.1E-21 | IPR000008 |
| SMART | SM00239 | C2_3c | 263 | 363 | 7.3E-24 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 364 | 21.131058 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 423 | 541 | 19.362734 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 30.882132 | IPR031468 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_038973286.1 | synaptotagmin-5-like [Phoenix dactylifera] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B8ZGK4 | synaptotagmin-5-like OS=Phoenix dactylifera OX=42345 GN=LOC103715911 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology