Basic Information
Locus ID:
gene-LOC103715900
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Short Name:
NTMC2T2.1
Description:
C2 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 36359322 | 36378542 | - | gene-LOC103715900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 63,748.49 Da | 32.55 | 107.27 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 264 | 366 | 7.79045E-27 | - |
| CDD | cd00030 | C2 | 442 | 538 | 5.22419E-28 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 248 | 1.6E-16 | IPR039010 |
| Pfam | PF00168 | C2 domain | 262 | 366 | 6.7E-22 | IPR000008 |
| Pfam | PF00168 | C2 domain | 440 | 531 | 7.5E-26 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 435 | 559 | 1.79E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 391 | 1.24E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 256 | 390 | 1.8E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 423 | 558 | 1.9E-33 | IPR035892 |
| SMART | SM00239 | C2_3c | 263 | 363 | 3.3E-23 | IPR000008 |
| SMART | SM00239 | C2_3c | 441 | 539 | 1.2E-23 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 364 | 20.371176 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 422 | 540 | 20.676548 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 27.248074 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 505 | 513 | 3.2E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 483 | 496 | 3.2E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 457 | 469 | 3.2E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_026663821.2 | synaptotagmin-5-like [Phoenix dactylifera] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B8J968 | synaptotagmin-5-like OS=Phoenix dactylifera OX=42345 GN=LOC103715900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology