Basic Information
Locus ID:
gene-LOC103715661
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 67691 | 69555 | - | gene-LOC103715661 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 44,888.82 Da | 65.05 | 59.42 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 197 | 238 | 3.83791E-24 | - |
| Pfam | PF13639 | Ring finger domain | 196 | 238 | 9.7E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 6 | 36 | 1.4E-13 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 269 | 362 | 3.5E-38 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 177 | 244 | 1.15E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 164 | 244 | 2.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 197 | 237 | 1.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 197 | 238 | 12.208971 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_008801592.3 | LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RDUF1 [Phoenix dactylifera] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7CLM9 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103715661 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology