Basic Information
Locus ID:
gene-LOC103715545
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 1098459 | 1107398 | + | gene-LOC103715545 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 45,949.86 Da | 39.77 | 68.89 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 260 | 332 | 1.85145E-33 | - |
| CDD | cd12619 | RRM2_PUB1 | 139 | 213 | 1.21386E-52 | - |
| CDD | cd12352 | RRM1_TIA1_like | 55 | 125 | 8.757E-37 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 262 | 327 | 4.8E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 210 | 1.2E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | 7.1E-16 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 133 | 242 | 4.3E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 37 | 131 | 1.75E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 246 | 338 | 1.49E-20 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 134 | 3.5E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 237 | 338 | 7.2E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 135 | 232 | 5.2E-26 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 139 | 212 | 2.5E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 261 | 330 | 1.2E-13 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 54 | 123 | 4.0E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 216 | 16.909462 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 260 | 334 | 14.47054 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | 15.681473 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_008801437.2 | oligouridylate-binding protein 1-like isoform X1 [Phoenix dactylifera] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8J9H3 | oligouridylate-binding protein 1-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103715545 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology