Basic Information
Locus ID:
gene-LOC103715512
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 732049 | 748085 | - | gene-LOC103715512 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 30,429.22 Da | 58.08 | 90.52 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 81 | 129 | 1.48263E-18 | - |
| Pfam | PF12906 | RING-variant domain | 81 | 128 | 1.2E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 77 | 132 | 1.16E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 74 | 133 | 2.1E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 80 | 129 | 5.2E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 73 | 135 | 20.178141 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_038983760.1 | E3 ubiquitin-protein ligase MARCHF8-like isoform X1 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8B9AAP3 | E3 ubiquitin-protein ligase MARCHF8-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103715512 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology