Basic Information
Locus ID:
gene-LOC103715504
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 403796 | 408317 | - | gene-LOC103715504 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 24,395.79 Da | 52.15 | 66.35 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 103 | 155 | 4.70242E-11 | - |
| Pfam | PF12906 | RING-variant domain | 103 | 154 | 4.1E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 99 | 158 | 1.65E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 164 | 5.6E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 102 | 155 | 5.4E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 95 | 161 | 19.217264 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_008801378.1 | uncharacterized protein LOC103715504 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8B7CKV9 | uncharacterized protein LOC103715504 OS=Phoenix dactylifera OX=42345 GN=LOC103715504 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology