Basic Information
Locus ID:
gene-LOC103715340
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
DNA repair protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 24875979 | 24909705 | + | gene-LOC103715340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 41,919.98 Da | 51.77 | 85.68 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 159 | 208 | 5.77693E-30 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 343 | 385 | 6.71504E-24 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 7.37396E-32 | - |
| Pfam | PF00627 | UBA/TS-N domain | 347 | 382 | 2.0E-11 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 5.0E-20 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 165 | 203 | 3.4E-13 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 267 | 323 | 4.2E-21 | IPR015360 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 263 | 328 | 1.16E-19 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 162 | 213 | 3.02E-12 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 330 | 389 | 6.32E-15 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 91 | 2.03E-24 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 158 | 208 | 1.5E-21 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 339 | 386 | 1.1E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 7.3E-29 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 259 | 323 | 4.8E-25 | IPR036353 |
| SMART | SM00165 | uba_6 | 347 | 384 | 5.0E-9 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.3E-23 | IPR000626 |
| SMART | SM00727 | CBM | 265 | 308 | 0.0065 | IPR006636 |
| SMART | SM00165 | uba_6 | 165 | 205 | 1.4E-5 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 390 | 3.3E-113 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 344 | 385 | 14.812021 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 21.502417 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 163 | 206 | 12.546894 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 358 | 372 | 4.4E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 341 | 357 | 4.4E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 293 | 315 | 4.4E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 373 | 388 | 4.4E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 243 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_010907325.1 | ubiquitin receptor RAD23d isoform X4 [Elaeis guineensis] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B7CKR3 | Ubiquitin receptor RAD23 OS=Phoenix dactylifera OX=42345 GN=LOC103715340 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology