Basic Information
Locus ID:
gene-LOC103714880
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 9608525 | 9614283 | + | gene-LOC103714880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 68,838.49 Da | 31.98 | 97.27 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 262 | 304 | 2.59512E-27 | - |
| Pfam | PF04564 | U-box domain | 258 | 328 | 4.2E-20 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 467 | 505 | 8.0E-8 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 384 | 423 | 1.3E-10 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 333 | 3.53E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 349 | 628 | 2.02E-51 | IPR016024 |
| Gene3D | G3DSA:1.20.930.20 | - | 17 | 132 | 2.3E-8 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 258 | 331 | 2.8E-30 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 338 | 633 | 9.6E-56 | IPR011989 |
| SMART | SM00185 | arm_5 | 425 | 465 | 0.052 | IPR000225 |
| SMART | SM00185 | arm_5 | 384 | 424 | 2.2E-6 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 261 | 324 | 1.8E-32 | IPR003613 |
| SMART | SM00185 | arm_5 | 507 | 547 | 160.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 466 | 506 | 0.027 | IPR000225 |
| SMART | SM00185 | arm_5 | 548 | 588 | 20.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 395 | 437 | 13.3874 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 257 | 331 | 41.496944 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_038970861.1 | U-box domain-containing protein 12-like [Phoenix dactylifera] | 0 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8Z9X0 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103714880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology