Basic Information
Locus ID:
gene-LOC103714767
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Transport inhibitor response 1-like protein Os04g0395600
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 16730431 | 16738290 | + | gene-LOC103714767 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 66,477.65 Da | 49.11 | 89.05 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 22 | 61 | 1.8E-19 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 168 | 188 | 0.41 | IPR001611 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 80 | 126 | 1.4E-22 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 37 | 563 | 1.45E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 60 | 590 | 9.9E-175 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 59 | 2.9E-16 | - |
| SMART | SM00367 | LRR_CC_2 | 450 | 473 | 37.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 474 | 498 | 490.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 499 | 523 | 51.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 390 | 414 | 16.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 118 | 142 | 520.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 143 | 168 | 49.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 327 | 350 | 190.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_026663364.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Phoenix dactylifera] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B8J8H3 | protein TRANSPORT INHIBITOR RESPONSE 1-like OS=Phoenix dactylifera OX=42345 GN=LOC103714767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology