Basic Information
Locus ID:
gene-LOC103714612
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 16249199 | 16267332 | - | gene-LOC103714612 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 148,884.09 Da | 50.13 | 75.68 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 597 | 928 | 1.03619E-88 | - |
| CDD | cd18793 | SF2_C_SNF | 1202 | 1309 | 7.71163E-52 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1200 | 1299 | 1.5E-14 | IPR001650 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 1044 | 1080 | 1.2E-4 | IPR018957 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 613 | 1005 | 7.3E-69 | IPR000330 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1043 | 1094 | 7.78E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 937 | 1356 | 3.77E-53 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 581 | 928 | 1.42E-46 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 796 | 939 | 3.5E-30 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1041 | 1098 | 2.4E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 691 | 780 | 5.8E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 568 | 659 | 1.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 943 | 1357 | 5.2E-61 | IPR027417 |
| SMART | SM00490 | helicmild6 | 1216 | 1299 | 1.2E-14 | IPR001650 |
| SMART | SM00487 | ultradead3 | 593 | 907 | 3.9E-29 | IPR014001 |
| SMART | SM00184 | ring_2 | 1044 | 1082 | 0.0041 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 612 | 890 | 12.923445 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1044 | 1080 | 10.527129 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1193 | 1352 | 14.019406 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1059 | 1068 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 792 | 815 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 775 | 823 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 489 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 667 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 658 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_008800142.2 | helicase-like transcription factor CHR28 [Phoenix dactylifera] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CIQ5 | helicase-like transcription factor CHR28 OS=Phoenix dactylifera OX=42345 GN=LOC103714612 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology