Basic Information
Locus ID:
gene-LOC103714581
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 5811552 | 5817749 | - | gene-LOC103714581 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 29,482.92 Da | 33.91 | 75.66 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 68 | 2.5E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 4 | 80 | 2.44E-12 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 75 | 2.3E-10 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 7 | 76 | 8.4E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 80 | 10.905961 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 252 | - | - |
| Coils | Coil | Coil | 230 | 250 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_008800095.1 | binding partner of ACD11 1 [Phoenix dactylifera] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CJ90 | binding partner of ACD11 1 OS=Phoenix dactylifera OX=42345 GN=LOC103714581 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology