Basic Information
Locus ID:
gene-LOC103714523
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Anaphase-promoting complex subunit cdc20
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 26782485 | 26786765 | - | gene-LOC103714523 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 51,871.35 Da | 50.83 | 74.14 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 274 | 309 | 4.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 325 | 363 | 0.0048 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 415 | 448 | 0.011 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 193 | 251 | 2.8E-6 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 159 | 448 | 5.25E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 99 | 451 | 1.2E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 186 | 225 | 3.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 321 | 363 | 0.001 | IPR001680 |
| SMART | SM00320 | WD40_4 | 228 | 266 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 270 | 309 | 3.4E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 409 | 448 | 5.0E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 277 | 311 | 11.65559 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 416 | 449 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 416 | 449 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 193 | 234 | 11.410742 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 277 | 318 | 14.251289 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 296 | 310 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 435 | 449 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 46 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_026663249.2 | cell division cycle 20.2, cofactor of APC complex-like [Phoenix dactylifera] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8J8A4 | cell division cycle 20.2, cofactor of APC complex-like OS=Phoenix dactylifera OX=42345 GN=LOC103714523 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology