Basic Information
Locus ID:
gene-LOC103714521
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Anaphase-promoting complex subunit cdc20
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 26791217 | 26805942 | - | gene-LOC103714521 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 52,052.54 Da | 50.53 | 72.74 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 413 | 448 | 0.01 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 274 | 309 | 4.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 325 | 363 | 0.0083 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 193 | 251 | 2.8E-6 | IPR024977 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 154 | 450 | 6.51E-57 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 99 | 451 | 2.0E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 186 | 225 | 3.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 409 | 448 | 1.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 270 | 309 | 3.4E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 228 | 266 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 321 | 363 | 0.002 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 277 | 318 | 14.251289 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 416 | 449 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 193 | 234 | 11.410742 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 416 | 449 | 9.783781 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 277 | 311 | 11.65559 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 296 | 310 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 435 | 449 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_038979736.1 | cell division cycle 20.2, cofactor of APC complex-like [Phoenix dactylifera] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8ZZI4 | cell division cycle 20.2, cofactor of APC complex-like OS=Phoenix dactylifera OX=42345 GN=LOC103714521 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology