Basic Information
Locus ID:
gene-LOC103714495
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Transcriptional activator that binds specific DNA sequence
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 7229803 | 7237140 | + | gene-LOC103714495 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 67,274.41 Da | 38.82 | 77.60 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17584 | REC_typeB_ARR-like | 21 | 135 | 7.38541E-66 | - |
| Pfam | PF00249 | Myb-like DNA-binding domain | 203 | 253 | 5.8E-7 | IPR017930 |
| Pfam | PF00072 | Response regulator receiver domain | 21 | 129 | 1.6E-23 | IPR001789 |
| SUPERFAMILY | SSF52172 | CheY-like | 18 | 142 | 1.99E-34 | IPR011006 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 198 | 258 | 2.6E-18 | IPR009057 |
| Gene3D | G3DSA:1.10.10.60 | - | 198 | 260 | 6.9E-32 | - |
| Gene3D | G3DSA:3.40.50.2300 | - | 19 | 183 | 9.3E-37 | - |
| SMART | SM00448 | REC_2 | 19 | 131 | 6.6E-31 | IPR001789 |
| TIGRFAM | TIGR01557 | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 201 | 254 | 4.6E-23 | IPR006447 |
| PIRSF | PIRSF036392 | RR_ARR_type-B | 1 | 586 | 9.3E-155 | IPR017053 |
| ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 198 | 257 | 9.287432 | IPR017930 |
| ProSiteProfiles | PS50110 | Response regulatory domain profile. | 20 | 135 | 42.593689 | IPR001789 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67710.1 | response regulator 11. Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. | 0 |
| RefSeq | XP_008799983.1 | two-component response regulator ORR26-like [Phoenix dactylifera] | 0 |
| Q5N6V8 | Two-component response regulator ORR26 OS=Oryza sativa subsp. japonica OX=39947 GN=RR26 PE=3 SV=2 | 0 | |
| TrEMBL | A0A8B7CIP8 | Two-component response regulator OS=Phoenix dactylifera OX=42345 GN=LOC103714495 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg34560, jg5549, jg6986 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3551 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013819 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g147690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42750, Sbi_jg45374 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11236 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002560 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35116, Sgl40495 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003720, gene:ENSEOMG00000013416 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0003700, CQ.Regalona.r1.6BG0003690 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30227870, pistato.v30227880 |
| Apiaceae | Apium graveolens | 2 | Ag1G01248, Ag5G02257 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G002030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712502, gene-LOC103714495 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.581.V1.1, AsparagusV1_10.1755.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G32210 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G67710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018396m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g22700.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g042580.2N, BniB03g044920.2N, BniB05g045860.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1298 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1371 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g12950 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g23550, gene.Thate09g12450 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1489, evm.TU.LG03.692 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022258, Pov_00034777 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G30673, Lb6G30678 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4224, BH02.4252, CH02.4279 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0043490, gene-QOZ80_1BG0093430 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0304770.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057175 |
| Poaceae | Oryza coarctata | 2 | Oco01G027650, Oco02G028730 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g67770.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G371800 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr03G022150, Chr05G031160, Chr08G019870, Chr0G024340 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G620600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG055770, gene_TRIDC3BG062450 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G391600.1, TraesCS3B02G423600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb144290_P001, Zm00001eb365420_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28441 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11748, Zma_g9214 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.1379, evm.TU.LG12.23, evm.TU.LG13.107 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g01000 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.826 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-27015, nbisL1-mrna-27202 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10239 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15576 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.454 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002632 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11205 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17695 |
| Salicaceae | Populus euphratica | 2 | populus_peu07664, populus_peu21711 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132630231, gene-LOC132633368, gene-LOC132641217 |
| Solanaceae | Solanum chilense | 2 | SOLCI003361900, SOLCI004920500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018660 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3372 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0387 |
| Zosteraceae | Zostera marina | 1 | Zosma05g08120.v3.1 |