Basic Information
Locus ID:
gene-LOC103714316
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 1824224 | 1825660 | - | gene-LOC103714316 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 46,864.99 Da | 61.92 | 108.09 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 30 | 73 | 3.19348E-19 | - |
| Pfam | PF04564 | U-box domain | 26 | 98 | 4.3E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 116 | 403 | 6.64E-13 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 20 | 100 | 1.06E-26 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 103 | 408 | 9.8E-13 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 102 | 2.7E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 29 | 94 | 3.7E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 25 | 101 | 37.180244 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_008799744.3 | E3 ubiquitin-protein ligase PUB23-like [Phoenix dactylifera] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CIL2 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103714316 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology