Basic Information
Locus ID:
gene-LOC103714157
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
E3 ubiquitin-protein ligase XBOS33
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 12691727 | 12700886 | - | gene-LOC103714157 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 55,457.59 Da | 51.28 | 83.83 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 49 | 132 | 2.8E-17 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 185 | 215 | 1.3E-5 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 227 | 273 | 1.1E-6 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 15 | 280 | 7.99E-48 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 321 | 381 | 1.67E-7 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 158 | 286 | 9.2E-23 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 309 | 391 | 2.7E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 6 | 152 | 7.8E-31 | IPR036770 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.035 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 1.1E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 227 | 259 | 1.7E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 184 | 213 | 1.3E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 142 | 2.5 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 131 | 9.24383 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 326 | 376 | 9.479666 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 227 | 253 | 10.68342 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 184 | 212 | 11.903864 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 227 | 253 | 10.71288 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 12.858994 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 13.971499 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 184 | 216 | 12.475739 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 131 | 9.224194 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 8.97673 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 341 | 350 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 200 | 214 | 3.6E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 112 | 127 | 3.6E-6 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 491 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_008799539.2 | probable E3 ubiquitin-protein ligase XBOS33 [Phoenix dactylifera] | 0 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7CI23 | probable E3 ubiquitin-protein ligase XBOS33 OS=Phoenix dactylifera OX=42345 GN=LOC103714157 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology