Basic Information
Locus ID:
gene-LOC103713980
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Short Name:
TIR1
Description:
Transport inhibitor response 1-like protein Os05g0150500
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 6904055 | 6909066 | - | gene-LOC103713980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 64,147.51 Da | 46.45 | 97.38 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 10 | 49 | 7.7E-16 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 68 | 114 | 2.9E-22 | IPR041101 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 43 | 7.06E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 73 | 535 | 1.16E-33 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 47 | 3.2E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 48 | 579 | 8.9E-172 | IPR032675 |
| SMART | SM00256 | fbox_2 | 11 | 52 | 5.1E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 372 | 396 | 0.71 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 432 | 455 | 530.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 481 | 505 | 21.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 106 | 130 | 480.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 131 | 156 | 3.9 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_038981015.1 | transport inhibitor response 1-like protein Os05g0150500 [Phoenix dactylifera] | 0 |
| Q0DKP3 | Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0150500 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8B9A314 | transport inhibitor response 1-like protein Os05g0150500 OS=Phoenix dactylifera OX=42345 GN=LOC103713980 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology