Basic Information
Locus ID:
gene-LOC103713563
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 14204980 | 14233874 | + | gene-LOC103713563 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 83,108.70 Da | 40.58 | 92.36 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 52 | 350 | 2.85577E-168 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 367 | 667 | 4.45892E-161 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 372 | 663 | 3.0E-41 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 50 | 350 | 1.86E-42 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 366 | 667 | 5.76E-51 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 365 | 667 | 9.5E-55 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 50 | 351 | 1.8E-33 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 367 | 668 | 36.253876 | IPR030395 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 18 | 6.0 | - |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 52 | 351 | 31.219414 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 722 | 741 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_008798763.1 | glycerophosphodiester phosphodiesterase GDPDL4-like isoform X1 [Phoenix dactylifera] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CGH9 | glycerophosphodiester phosphodiesterase OS=Phoenix dactylifera OX=42345 GN=LOC103713563 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology