Basic Information
Locus ID:
gene-LOC103713384
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 2400074 | 2403003 | - | gene-LOC103713384 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 49,019.27 Da | 44.44 | 95.57 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 33 | 75 | 4.01265E-27 | - |
| Pfam | PF04564 | U-box domain | 29 | 99 | 2.9E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 21 | 105 | 1.02E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 203 | 423 | 2.07E-19 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 122 | 424 | 5.2E-16 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 28 | 102 | 1.5E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 32 | 95 | 1.6E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 28 | 102 | 39.391666 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_008798516.1 | U-box domain-containing protein 21-like [Phoenix dactylifera] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7CFZ0 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103713384 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology