Basic Information
Locus ID:
gene-LOC103713093
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 2667284 | 2683821 | + | gene-LOC103713093 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 30,079.18 Da | 60.00 | 98.21 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 76 | 124 | 5.31564E-18 | - |
| Pfam | PF12906 | RING-variant domain | 76 | 123 | 2.1E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 72 | 127 | 2.98E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 128 | 5.1E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 75 | 124 | 8.4E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 68 | 130 | 20.960567 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 44 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_008798090.1 | E3 ubiquitin-protein ligase MARCHF1-like isoform X1 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8B7MV86 | E3 ubiquitin-protein ligase MARCHF1-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103713093 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology