Basic Information
Locus ID:
gene-LOC103712941
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Short Name:
CMT1
Description:
DNA (cytosine-5)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 3183846 | 3192732 | + | gene-LOC103712941 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 103,740.40 Da | 48.23 | 76.78 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04716 | BAH_plantDCM_I | 188 | 312 | 8.6709E-58 | - |
| CDD | cd18635 | CD_CMT3_like | 462 | 518 | 3.82989E-29 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 482 | 516 | 3.7E-9 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 527 | 888 | 1.1E-31 | IPR001525 |
| Pfam | PF01426 | BAH domain | 190 | 308 | 2.7E-9 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 355 | 889 | 1.87E-77 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 456 | 527 | 7.15E-12 | IPR016197 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 681 | 855 | 5.7E-226 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 126 | 297 | 4.4E-54 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 462 | 906 | 5.7E-226 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 337 | 440 | 5.4E-14 | - |
| SMART | SM00298 | chromo_7 | 462 | 525 | 2.6E-8 | IPR000953 |
| SMART | SM00439 | BAH_4 | 189 | 312 | 5.0E-16 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 354 | 896 | 45.791306 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 189 | 312 | 17.968307 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 463 | 516 | 11.3086 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 533 | 545 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 486 | 506 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 576 | 590 | 8.7E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 355 | 371 | 8.7E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 622 | 635 | 8.7E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 171 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_008797880.1 | DNA (cytosine-5)-methyltransferase 1-like [Phoenix dactylifera] | 0 |
| Q9AXT8 | DNA (cytosine-5)-methyltransferase 1 OS=Zea mays OX=4577 GN=MET2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CF02 | DNA (Cytosine-5)-methyltransferase 1-like OS=Phoenix dactylifera OX=42345 GN=LOC103712941 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology