Basic Information
Locus ID:
gene-LOC103712884
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
AMSH-like ubiquitin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 5279604 | 5295161 | + | gene-LOC103712884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 57,902.11 Da | 53.92 | 84.76 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 339 | 513 | 5.14903E-114 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 336 | 442 | 2.2E-17 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 10 | 106 | 2.0E-12 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 338 | 469 | 5.36E-21 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 320 | 513 | 3.2E-72 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 2 | 126 | 3.1E-32 | - |
| SMART | SM00232 | pad1_6 | 338 | 466 | 2.9E-21 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 339 | 469 | 32.871788 | IPR037518 |
| Coils | Coil | Coil | 84 | 111 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_008797799.2 | AMSH-like ubiquitin thioesterase 1 [Phoenix dactylifera] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7CET6 | AMSH-like ubiquitin thioesterase 1 OS=Phoenix dactylifera OX=42345 GN=LOC103712884 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology