Basic Information
Locus ID:
gene-LOC103712810
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
ribosomal protein L35
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 19915900 | 19928157 | + | gene-LOC103712810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.91 | 16,195.17 Da | 68.38 | 83.54 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01632 | Ribosomal protein L35 | 77 | 133 | 2.9E-17 | IPR021137 |
| SUPERFAMILY | SSF143034 | L35p-like | 77 | 139 | 9.94E-18 | IPR037229 |
| Gene3D | G3DSA:4.10.410.60 | - | 78 | 140 | 7.7E-18 | IPR037229 |
| TIGRFAM | TIGR00001 | rpmI_bact: ribosomal protein bL35 | 77 | 139 | 3.6E-20 | IPR001706 |
| ProSitePatterns | PS00936 | Ribosomal protein L35 signature. | 80 | 106 | - | IPR018265 |
| PRINTS | PR00064 | Ribosomal protein L35 signature | 78 | 95 | 1.5E-16 | IPR001706 |
| PRINTS | PR00064 | Ribosomal protein L35 signature | 111 | 129 | 1.5E-16 | IPR001706 |
| PRINTS | PR00064 | Ribosomal protein L35 signature | 96 | 110 | 1.5E-16 | IPR001706 |
| Hamap | MF_00514 | 50S ribosomal protein L35 [rpmI]. | 76 | 139 | 14.408175 | IPR001706 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24090.1 | Ribosomal protein L35. | 0 |
| RefSeq | XP_008797670.1 | 50S ribosomal protein L35, chloroplastic [Phoenix dactylifera] | 0 |
| Q8VZ55 | Large ribosomal subunit protein bL35c OS=Arabidopsis thaliana OX=3702 GN=RPL35 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CEN0 | 50S ribosomal protein L35 OS=Phoenix dactylifera OX=42345 GN=LOC103712810 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg33107 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10874 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014914 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g191720 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24784, Sbi_jg8650 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19956 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022272 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42560, Sgl47314 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009573, gene:ENSEOMG00000033049 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0017290, CQ.Regalona.r1.8BG0018300 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30264860 |
| Apiaceae | Apium graveolens | 1 | Ag4G02213 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712810 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.312.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G18801 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G24090.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000362m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g02990.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g019630.2N, BniB02g021410.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2615 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2765 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g07340 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0118s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g10370 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.350 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000763 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26638 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2457, BH06.2256, CH06.2484 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0546430, gene-QOZ80_6BG0499800 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_036602, gene-QYE76_036630, gene-QYE76_036831 |
| Poaceae | Oryza coarctata | 2 | Oco11G013890, Oco12G014080 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g43900.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G207900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0401551 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr05G008650, Chr0G007730, Chr10G019060, Chr11G003530 |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G443300, Tel7E01G876500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG071620, gene_TRIDC7BG066890 |
| Poaceae | Triticum aestivum | 3 | TraesCS7B02G421100.1, TraesCS7D02G499800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb000270_P001, Zm00001eb386680_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40894, nbis-gene-9907 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30898, Zma_g33148 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2600, evm.TU.LG23.823 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g32280, gene.Posoc03g12360, gene.Posoc03g13450 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13399 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21235 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16615 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014693 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14573 |
| Salicaceae | Populus euphratica | 1 | populus_peu05549 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602909 |
| Solanaceae | Solanum chilense | 1 | SOLCI004411500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026300 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12568_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0931 |
| Zosteraceae | Zostera marina | 1 | Zosma03g19320.v3.1 |