Basic Information
Locus ID:
gene-LOC103712784
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 20190458 | 20210472 | - | gene-LOC103712784 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 141,438.33 Da | 47.31 | 72.86 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 310 | 438 | 3.533E-20 | - |
| CDD | cd12108 | Hr-like | 667 | 824 | 2.64414E-29 | - |
| CDD | cd12108 | Hr-like | 50 | 175 | 3.51539E-32 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1135 | 1178 | 1.78474E-17 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 307 | 440 | 1.1E-7 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 663 | 825 | 2.1E-8 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 56 | 177 | 4.7E-11 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 1007 | 1082 | 5.0E-18 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 1135 | 1177 | 4.9E-7 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 1183 | 1240 | 2.0E-22 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 1000 | 1063 | 5.49E-17 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1134 | 1181 | 5.89E-8 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1073 | 1128 | 3.01E-14 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 1207 | 1249 | 3.8E-14 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 658 | 889 | 4.1E-27 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 309 | 456 | 2.0E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1131 | 1180 | 1.1E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 46 | 195 | 9.0E-34 | - |
| SMART | SM00184 | ring_2 | 1136 | 1177 | 1.7E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1072 | 1135 | 28.729977 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1136 | 1178 | 11.323791 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1000 | 1069 | 25.418638 | IPR008913 |
| Coils | Coil | Coil | 752 | 776 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_008797630.2 | zinc finger protein BRUTUS-like isoform X1 [Phoenix dactylifera] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CEL2 | zinc finger protein BRUTUS-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103712784 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology