Basic Information
Locus ID:
gene-LOC103712639
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 7609158 | 7623180 | - | gene-LOC103712639 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 51,506.04 Da | 53.66 | 84.01 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08969 | USP8 dimerisation domain | 9 | 100 | 9.9E-14 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 330 | 425 | 4.7E-5 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 333 | 449 | 5.1E-9 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 1 | 126 | 2.0E-36 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 397 | 453 | 4.0E-14 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 318 | 393 | 1.4E-16 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 327 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16144.1 | associated molecule with the SH3 domain of STAM 3. Encodes AMSH3, a deubiquitinating enzyme that hydrolyzes K48- and K63-linked ubiquitin chains in vitro. Required for intracellular trafficking and vacuole biogenesis. | 0 |
| RefSeq | XP_038988606.1 | LOW QUALITY PROTEIN: AMSH-like ubiquitin thioesterase 3 [Phoenix dactylifera] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B9APA8 | LOW QUALITY PROTEIN: AMSH-like ubiquitin thioesterase 3 OS=Phoenix dactylifera OX=42345 GN=LOC103712639 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology