Basic Information
Locus ID:
gene-LOC103712369
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Zinc-finger of the MIZ type in Nse subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 6684452 | 6688846 | + | gene-LOC103712369 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 113,972.77 Da | 53.09 | 103.54 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16452 | SP-RING_like | 256 | 297 | 9.70897E-15 | - |
| Pfam | PF04564 | U-box domain | 255 | 323 | 5.4E-10 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 788 | 996 | 4.03E-7 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 330 | 417 | 6.52E-8 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 252 | 323 | 3.53E-20 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 426 | 761 | 1.84E-36 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 423 | 872 | 1.1E-33 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 251 | 319 | 2.0E-20 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 11 | 126 | 1.8E-5 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 320 | 422 | 2.1E-9 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 893 | 1021 | 1.8E-5 | IPR011989 |
| SMART | SM00185 | arm_5 | 355 | 394 | 94.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 944 | 985 | 19.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 255 | 318 | 2.5E-13 | IPR003613 |
| SMART | SM00185 | arm_5 | 438 | 476 | 41.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 898 | 940 | 400.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 447 | 478 | 10.0624 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 251 | 325 | 18.560045 | IPR003613 |
| Coils | Coil | Coil | 72 | 92 | - | - |
| Coils | Coil | Coil | 193 | 223 | - | - |
| Coils | Coil | Coil | 37 | 57 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20780.1 | senescence-associated E3 ubiquitin ligase 1. Encodes a protein containing a U-box and an ARM domain. | 0 |
| RefSeq | XP_017699591.2 | U-box domain-containing protein 44-like [Phoenix dactylifera] | 0 |
| Q9LM76 | U-box domain-containing protein 44 OS=Arabidopsis thaliana OX=3702 GN=PUB44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7MV25 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103712369 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30167590 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G006120 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712369 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0917 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0960 |
| Salicaceae | Populus euphratica | 2 | populus_peu03893, populus_peu34722 |