Basic Information
Locus ID:
gene-LOC103712327
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000026F | 2083695 | 2099755 | + | gene-LOC103712327 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 42,099.82 Da | 63.31 | 59.58 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 327 | 367 | 8.66005E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 326 | 372 | 2.8E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 327 | 373 | 2.14E-14 | - |
| SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 28 | 38 | 1.18E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 310 | 377 | 1.3E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 328 | 366 | 7.8E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 328 | 367 | 11.95817 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 55 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_008797036.1 | probable E3 ubiquitin-protein ligase LUL4 [Phoenix dactylifera] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7CDS8 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103712327 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology